mouse anti human cd66a pe (R&D Systems)
Structured Review
![Sequencing data reveal differentially expressed miRNAs in colonic epithelial cells of patients with active and quiescent UC. [A] FACS of colonic epithelial cells and distribution of crypt-top CD44 − <t>CD66a</t> + and crypt-bottom CD44 + CD66a − epithelial cell types in inflammatory [aUC] [ n = 16] and non-inflammatory [qUC and HC] [ n = 15 and 17] colon tissues. Each dot represents a sample from the patients of the second study group. Mean ± SD of each group is represented by vertical lines. To compare the groups a non-parametric Mann–Whitney U test was performed, * p < 0.05. [B] MDS plot showing the similarity structure of the miRNA transcriptomes in crypt-top [CD66a + ] and crypt-bottom [CD44 + ] colonic epithelial cell populations in active UC [aUC] [ n = 16], quiescent UC [qUC] [ n = 15], and HC [ n = 17] based on normalized expression values. Dots represent samples shaped by cell population. Dot colours represent condition. The centroid of ellipses corresponds to the condition group mean; the shapes are defined by covariance within the group. [C, D] Volcano plots of differentially expressed miRNAs in crypt-top [CD66a + ] and crypt-bottom [CD44 + ] colonic epithelial cell populations in aUC [ n = 16], qUC [ n = 15], and HC [ n = 17]. Colours indicate significantly [FDR < 0.05] differentially expressed miRNAs with an absolute value of log 2 FC > 1 between compared groups. [E–G] Venn diagrams representing the numbers of commonly and uniquely differentially expressed miRNAs in [E] crypt-bottom [CD44 + ] and [F] crypt-top [CD66a + ] epithelial cell populations in different UC activity, and [G] between crypt-bottom and crypt-top cells in the same condition. [H] Overrepresented pathways with the top five FDR values between crypt-top [CD66a + ] and crypt-bottom [CD44 + ] colonic epithelial cell populations during aUC [ n = 16], qUC [ n = 15], and HC [ n = 17] identified by miRNA–target gene set enrichment analysis. Dot size represents the number of miRNA gene–target counts in the significantly enriched [FDR < 0.05] GO categories.](https://pub-med-central-images-cdn.bioz.com/pub_med_central_ids_ending_with_7558/pmc11637558/pmc11637558__jjae108_fig2.jpg)
Mouse Anti Human Cd66a Pe, supplied by R&D Systems, used in various techniques. Bioz Stars score: 93/100, based on 19 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Average 93 stars, based on 19 article reviews
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1) Product Images from "The microRNA Expression in Crypt-Top and Crypt-Bottom Colonic Epithelial Cell Populations Demonstrates Cell-Type Specificity and Correlates with Endoscopic Activity in Ulcerative Colitis"
Article Title: The microRNA Expression in Crypt-Top and Crypt-Bottom Colonic Epithelial Cell Populations Demonstrates Cell-Type Specificity and Correlates with Endoscopic Activity in Ulcerative Colitis
Journal: Journal of Crohn's & Colitis
doi: 10.1093/ecco-jcc/jjae108
Figure Legend Snippet: Sequencing data reveal differentially expressed miRNAs in colonic epithelial cells of patients with active and quiescent UC. [A] FACS of colonic epithelial cells and distribution of crypt-top CD44 − CD66a + and crypt-bottom CD44 + CD66a − epithelial cell types in inflammatory [aUC] [ n = 16] and non-inflammatory [qUC and HC] [ n = 15 and 17] colon tissues. Each dot represents a sample from the patients of the second study group. Mean ± SD of each group is represented by vertical lines. To compare the groups a non-parametric Mann–Whitney U test was performed, * p < 0.05. [B] MDS plot showing the similarity structure of the miRNA transcriptomes in crypt-top [CD66a + ] and crypt-bottom [CD44 + ] colonic epithelial cell populations in active UC [aUC] [ n = 16], quiescent UC [qUC] [ n = 15], and HC [ n = 17] based on normalized expression values. Dots represent samples shaped by cell population. Dot colours represent condition. The centroid of ellipses corresponds to the condition group mean; the shapes are defined by covariance within the group. [C, D] Volcano plots of differentially expressed miRNAs in crypt-top [CD66a + ] and crypt-bottom [CD44 + ] colonic epithelial cell populations in aUC [ n = 16], qUC [ n = 15], and HC [ n = 17]. Colours indicate significantly [FDR < 0.05] differentially expressed miRNAs with an absolute value of log 2 FC > 1 between compared groups. [E–G] Venn diagrams representing the numbers of commonly and uniquely differentially expressed miRNAs in [E] crypt-bottom [CD44 + ] and [F] crypt-top [CD66a + ] epithelial cell populations in different UC activity, and [G] between crypt-bottom and crypt-top cells in the same condition. [H] Overrepresented pathways with the top five FDR values between crypt-top [CD66a + ] and crypt-bottom [CD44 + ] colonic epithelial cell populations during aUC [ n = 16], qUC [ n = 15], and HC [ n = 17] identified by miRNA–target gene set enrichment analysis. Dot size represents the number of miRNA gene–target counts in the significantly enriched [FDR < 0.05] GO categories.
Techniques Used: Sequencing, MANN-WHITNEY, Expressing, Activity Assay
Figure Legend Snippet: WGCNA in colonic epithelial cell populations reveals miRNA co-expression modules which reflect endoscopic activity of UC. [A] Network displaying identified co-expression modules [M1 and M2] in crypt-top [CD66a] and crypt-bottom [CD44] colonic epithelial cells of patients with active [aUC] [ n = 16], quiescent UC [qUC] [ n = 15], and control individuals [ n = 17]. The colour and size of the node represents distinct modules and strength of connectivity, respectively. [B] Dot plot showing normalized enrichment score [NES] of modules M1 and M2 in crypt-top [CD66a] and crypt-bottom [CD44] colonic epithelial cells of patients with active UC, quiescent UC, and control individuals. The colour and size of the dot represents the value and absolute value of NES, respectively. The box marks significant value [ p adj, < 0.05]. Plots [C] and [E] show the correlation between module M1 eigengene value and Mayo endoscopic activity in crypt-bottom [CD44] and crypt-top [CD66a] colonic epithelial cells as well as colon tissue, respectively. rho—Spearman correlation coefficient. Each dot represents a different sample. Plots [D] and [F] show the AUC-ROC curves reflecting the performance of M1 module eigengene value at distinguishing between active UC [aUC] and quiescent UC [qUC] in crypt-bottom [CD44] and crypt-top [CD66a] colonic epithelial cells as well as in colon tissue, respectively.
Techniques Used: Expressing, Activity Assay, Control
